NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135224_1003082

Scaffold Ga0135224_1003082


Overview

Basic Information
Taxon OID3300029753 Open in IMG/M
Scaffold IDGa0135224_1003082 Open in IMG/M
Source Dataset NameMarine harbor viral communities from the Indian Ocean - SRH3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)981
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location NameIndian Ocean
CoordinatesLat. (o)1.26600833Long. (o)103.8333333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014949Metagenome / Metatranscriptome258Y
F017591Metagenome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0135224_10030821F017591AGGAMISNADALVDYVKDFTGSSNNQEIRQCIFLAEMSMRNIELPALRTNPYTTIGTANSDGQVPIPADMLKPIVFFYQGGPGNSPNAGPWIIYDRIGERDMIAQQMVAQLYLNPVNIPQVYRGNFAEVGQFYEFTPLLTSGAQVNMYYYTSWPELYSLDSGGSEIQTNVVLQSWPEGYVYGTLREYYLKRKMPEDAAVWAAKFDRDWETGIIIHVD
Ga0135224_10030822F014949N/AMPDGSLGYKWMELPEVIATQISNDYFGGLSWHTIKRDKGLKAQFYRVVEREYSAFVCYPHGKLPIPIDVPYPAKIGQAKFFAGANFAGHH
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