NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222749_10148401

Scaffold Ga0222749_10148401


Overview

Basic Information
Taxon OID3300029636 Open in IMG/M
Scaffold IDGa0222749_10148401 Open in IMG/M
Source Dataset NameMetatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1141
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000535Metagenome / Metatranscriptome1044Y
F000794Metagenome / Metatranscriptome889Y
F003372Metagenome / Metatranscriptome491Y

Sequences

Protein IDFamilyRBSSequence
Ga0222749_101484011F000535GGAMKTKTHFAFRVDIWDDTGDSIVEHVAGVDDFEVAEATYRAAILRWPRAWITLRQGARVIEDSQRLRAFAVWLILGGV
Ga0222749_101484012F003372N/AMLLRRVAFPDFCEPCLPRFVFGMAVLATLLVTASAAHAACRSPKNICKHFDDCLQRTSDPNNKDADGIRVGVKARNGQIVLAGAEVCARDLGKKQQWDKWARGCSELEFVQIGKVGLELGKVHCDRYSQ
Ga0222749_101484013F000794GGAGMAKTTPPLTAQERVILFCAATGVSHAAVGITAHAIQSMAIKGFIVHDRESGAYALTDSGRAALLAILGDAGLT
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