NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0238435_107107

Scaffold Ga0238435_107107


Overview

Basic Information
Taxon OID3300029349 Open in IMG/M
Scaffold IDGa0238435_107107 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1136
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Klamath Basin, Usa

Source Dataset Sampling Location
Location NameUSA: Iron Gate Dam, Klamath Basin, California
CoordinatesLat. (o)41.93Long. (o)-122.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036666Metagenome / Metatranscriptome169N
F039533Metagenome / Metatranscriptome163N

Sequences

Protein IDFamilyRBSSequence
Ga0238435_1071071F036666N/ATPRPAFRPRTQHQDPMYNQGFQAVARAAAKLRQTAQGARILAEWLGDGGTPVDRRQAQDRIDTCNRCIHNKPTDARSVTKTVAEAILEQEQARNDMAMFLQGEGLAGTCEVCGCYLKLKVWVPLSYLGKTEMPDNCWISHERKAI
Ga0238435_1071072F039533N/AMSFKEPSRVWNVVSAMLEAEQPRSRNRARINSCFNGNPPYTQEEARDNRIQTNVNFLEGTRIIHASRQQFTNAFLKPQNYFSVGLDIGPRDKRTQWGNIITKQLNRVMKRSPKYSTVLESQFAATVLHGIGPVTWLRDRDWCPSARGTEDILVPTNTLTTMENLSHFAIYTSFTAQDLIRMTRGENVDPGWNLTLVNQLLAAMIEREATSLQVNDWSGQYFPEKIEEDFK
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