| Basic Information | |
|---|---|
| Taxon OID | 3300029349 Open in IMG/M |
| Scaffold ID | Ga0238435_100926 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Oregon State University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6060 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Klamath Basin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Iron Gate Dam, Klamath Basin, California | |||||||
| Coordinates | Lat. (o) | 41.93 | Long. (o) | -122.44 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000258 | Metagenome / Metatranscriptome | 1443 | Y |
| F001229 | Metagenome / Metatranscriptome | 741 | Y |
| F005054 | Metagenome / Metatranscriptome | 413 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0238435_1009263 | F000258 | GGAGG | MTANYKLDAMFEIRKYLWENLVEYNIFDEDEYYSDNLSQTIIPIIPVQQSAEMNHFLSGKKHIVYDKVGMSYEDNWLICCEQILFTIYSTDVSEIVEIRNIMTDLFRRMDDSAREVNRSGSINDKFKFHSIYIADISPTEPSQEIQGFLSSDLTLEVKYSRITDQDGRFL |
| Ga0238435_1009265 | F001229 | AGG | MNDLIGSVLSMKMDVYKQIDSQNPDTGAIIKEWNYYKTVDCHAKGMITNSSTIRSSDNQTFNNKYVNEQNIQIRTIERIVSRDKVTNIRDSNNNVIWTEINFPSETPTVFEIIGTTPITDPFGRVIGYNSSLKRSENQQIGL |
| Ga0238435_1009266 | F005054 | N/A | MAEILINSQSPISHKVFWNGDVANSDANPVVGLYDVSFDPAVTPMVSPLELLTNLYSILDENNPGTYTVNIPYQYTNRNRTLRLIWNYTVNGTPVSKVDEVFVITPYVDFNHAQDLGFSTDSSDPNYKSYKELIAAEKYARKVIEQHTGQNFYLHNECAVVYGRGSDILPLPSKISQIYYLYSRDDLLIDTLEVINNWGYDVILSESGYGIRINRASALDNTVYLANGMVPPSINGYGNGVFQDGVEYKVCGRFGWDHVPDDVELAAIELMKDYFSKDTIWRNKYIKKISTFDWDFEYTGEAHSGTGNAYADKLLADYVLTTKVDII |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |