| Basic Information | |
|---|---|
| Taxon OID | 3300029349 Open in IMG/M |
| Scaffold ID | Ga0238435_100038 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Oregon State University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 39750 |
| Total Scaffold Genes | 62 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 51 (82.26%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Klamath Basin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Iron Gate Dam, Klamath Basin, California | |||||||
| Coordinates | Lat. (o) | 41.93 | Long. (o) | -122.44 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000325 | Metagenome / Metatranscriptome | 1296 | Y |
| F006543 | Metagenome / Metatranscriptome | 370 | Y |
| F012108 | Metagenome / Metatranscriptome | 283 | Y |
| F043359 | Metagenome / Metatranscriptome | 156 | Y |
| F064189 | Metagenome | 129 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0238435_10003853 | F043359 | GGA | MEWNNSHKRPPYVGQKVYYFGENIGIGIGHYSYEERTMIPYTYNDKNEKEYTDKEIKLCPHIFTNVSWGVVDACDAPYWLPYDEERAKSWCPIIPEQYTKGLYD |
| Ga0238435_10003854 | F064189 | AGGA | MAKNFKDLHTVDAKDMTRDQAMVYIINFFNSRMATMSNAHRNKVKELIGLHEIDTTELVNKYLELVLENS |
| Ga0238435_10003856 | F012108 | AGGA | MINLQLSVREAMNLATNCNLEIYERIVTAFEVALGVNQLRVVTITGGMTLDNRIPCIKAIRLHTGWGLKEAKEWTDFMVGGWKYDKFVPASVGARQSITLKTPEAAENLLRDLAGLGCEGFLS |
| Ga0238435_10003857 | F006543 | GGAG | MKKFSFAVDIVADALDRDTVVESIRECLSGSLPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAHNAKVEAEATA |
| Ga0238435_10003860 | F000325 | AGGAG | MMKTANGNDKLGKENCIVVSRPVGDTCPPDCDFLGNGCYAEDLENIYPGVRPAGMQNLITEKNRIRAMLVDAVKKNKDVRWHERGDFFKDGQLDNEYVDNVLWACESILASGGSLPTMWAYTHIYDTRLSVELGKYINMYASIHDGEDMKQAKAAGFKHFAWCDSDTKIAPKRPRGKAKAAAWRASLPKLIVLEGEKFITCPEIRRGRGVVTCTKSKNSVHCDLCPRGLANVLFPAH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |