NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183748_1000830

Scaffold Ga0183748_1000830


Overview

Basic Information
Taxon OID3300029319 Open in IMG/M
Scaffold IDGa0183748_1000830 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20401
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (54.35%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameRed Sea: TARA_032
CoordinatesLat. (o)23.36Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056918Metagenome137Y
F074050Metagenome / Metatranscriptome120Y
F077815Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0183748_100083012F056918N/AMMKFYMRSEIGRCNMKHLKVGDIVIAVFLGTEDRCEVIEIVDKKKKSYKLRMQSGTILPGVTWLKNLDDKQKKKTPWYIVKYIGHTERKVIEKDSIQKSDLDKAIAKQKKFLRGDIKE
Ga0183748_10008303F074050N/AMKKSEIRKIIIKELQEAVPRTVGRGTVTDNARLAMVISSLGKRAKGAFQKRKVVAQVIMSLASALEITPNEVLRAYMDYKKDAKGDASTKVKKDD
Ga0183748_10008304F077815GGAMDGKDLKQRLKRIIREEVSSILLTEESYKFGTLADPKDMDPMDPMVKVKDFGTLNRSSIRNQIVDRLTGALQSAKDAAKGGDSSYEAYKQLQDLISDAGVLYKLIGAELDIANQLEAKRLKGGRRTIPIPKQ
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