NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135226_1013515

Scaffold Ga0135226_1013515


Overview

Basic Information
Taxon OID3300029308 Open in IMG/M
Scaffold IDGa0135226_1013515 Open in IMG/M
Source Dataset NameMarine harbor viral communities from the Indian Ocean - SRB2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)683
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location NameIndian Ocean
CoordinatesLat. (o)3.715Long. (o)105.408333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000999Metagenome809Y
F004618Metagenome430Y

Sequences

Protein IDFamilyRBSSequence
Ga0135226_10135151F004618N/ANSYRFDREESLSLSDCEEQMKDWARDLVDREIRRRPEGLKLKQLEDLKTKAIDQVMESGTPEELIKQLDQTTKKIGIAWIIDTSKIKQIEAQ
Ga0135226_10135152F000999GAGMDVEKLKEMEANTDFVVSWFAKKYNKTIFRVGNLNKEGCRVWEQGGKKYMCFWDTVLERYTTCINPMITYKKARN

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