| Basic Information | |
|---|---|
| Taxon OID | 3300028878 Open in IMG/M |
| Scaffold ID | Ga0307278_10230218 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 824 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Colorado | |||||||
| Coordinates | Lat. (o) | 38.9206 | Long. (o) | -106.9489 | Alt. (m) | Depth (m) | 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000280 | Metagenome / Metatranscriptome | 1383 | Y |
| F001935 | Metagenome / Metatranscriptome | 615 | Y |
| F002111 | Metagenome / Metatranscriptome | 592 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307278_102302181 | F001935 | AGG | VYLQHLSSLQFLSYAAFLGVVIAAVFRLLPGRAPPIRTEPYTDEELGRHDRKLAKYFIGGAAFLVLGSLHMVAKNLPWVAEWLASAGYAGHLVRDLS |
| Ga0307278_102302182 | F000280 | AGAAGG | MAPPRGPARPLFGYRDVGEDVRHSRRAVSRAWIIIALIGVLYLAWTLTVYFVEPGLR |
| Ga0307278_102302183 | F002111 | N/A | GSPRLGAEVLMAVAVLPYVVYSSASEAVVPADRWEGLYASLQTLKAHVQEYPGCQRFDVFIRAEDNGDIRIHCYTTWDTPWQLEAFLERGYTFERLLADFGGLEPVRSLVMEKVF |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |