NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307278_10110363

Scaffold Ga0307278_10110363


Overview

Basic Information
Taxon OID3300028878 Open in IMG/M
Scaffold IDGa0307278_10110363 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1236
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F001935Metagenome / Metatranscriptome615Y
F002111Metagenome / Metatranscriptome592Y
F008327Metagenome / Metatranscriptome335Y

Sequences

Protein IDFamilyRBSSequence
Ga0307278_101103631F001935N/AVYTQRLSSLEFFTYAAFFAIVVVSIASILPGRKPPIRTEPYADDELKAHDGKLPKYFLAGGAFLLLGGVHMILKNLPWTADWLARAGYAGHLVRDLSNTHVMIVG
Ga0307278_101103632F000280AGAAGGMARNQDDQPRPARPLFGYRDVGEDVRHSRTALTRAWIVLAILIVIYLAWTLTVYFLEPGL
Ga0307278_101103633F002111AGAAGMVAAPPFVSYSSLTEALIPATLWPTVYSSLQALKGHVQEYPGCQNFDVFVRAEGDGDALVHCYTTWDTPGQLEAFLERGYTFERLLADIGSGLGPGRSLVMEKVF
Ga0307278_101103634F008327GAGGMFPKGDTPEKARDFYLYLQGHHETEGRVATWHVDWLSLAWLWGFLIVLVLALLLWVKQYRTTRQRSGIYPIDSFGGWTTEGAGPATIFFIVFTAFIVAFSVAIIVGHIVYGQKF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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