NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307278_10000071

Scaffold Ga0307278_10000071


Overview

Basic Information
Taxon OID3300028878 Open in IMG/M
Scaffold IDGa0307278_10000071 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47247
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (65.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004298Metagenome / Metatranscriptome445Y
F006646Metagenome / Metatranscriptome368Y
F006720Metagenome / Metatranscriptome366Y

Sequences

Protein IDFamilyRBSSequence
Ga0307278_1000007136F006646GGAMTPMSTQLLVPYVVLWASLMRALLVRAQIAPPLCGRCGLKLERSALGETICRCH
Ga0307278_1000007146F006720N/AMQLRLSDPSYTDRLAHFLRSLGQTAIVAGPTQLEVDTPRSELLIYLRVWAVLYPDAEVQVGNGEDEAPAA
Ga0307278_100000718F004298N/AMRRDAEVWQVLLRRKGLSVADLARQLGVTRQHAHRLLTGRRQAEAQRLELESALALGTPSRGHPLYAIGELDDAGELDLVPAGDAQPLFADREVATGVARKLDSTSSNVCVLPLWPGYAWRNLVAFHAAWGAEPEPRKLFIVDAEADEVPLEAVLAEVSAGLEATLKARAQASDPAFLEEVNSRLSGYTDARLPQ
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