NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307310_10546010

Scaffold Ga0307310_10546010


Overview

Basic Information
Taxon OID3300028824 Open in IMG/M
Scaffold IDGa0307310_10546010 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)587
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000336Metagenome / Metatranscriptome1274Y
F003318Metagenome / Metatranscriptome494Y

Sequences

Protein IDFamilyRBSSequence
Ga0307310_105460101F003318N/AALIDEFAVPGKKFNATAFNAKVNEGNAKFQQAIADEKFTARRPVLVNLKGQFDADAAHLRSKASRGKITPALATEMKNDINKTYDHALGR
Ga0307310_105460102F000336N/AMIMRSAGKPKRGKLSGKTSRKTSRKKSELDSALDQISDESVAAAKDEFQDLLAQAKGDTSELVRQNAEELDRRLVLLKKRKIDKEDFDFFIENQKRDLRVFVDSQPAQAQER

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