NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307302_10095670

Scaffold Ga0307302_10095670


Overview

Basic Information
Taxon OID3300028814 Open in IMG/M
Scaffold IDGa0307302_10095670 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1415
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009456Metagenome317Y
F015886Metagenome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0307302_100956702F009456AGGAGGVNINLHLTDDTQLRAHGFVAASGLFAEVQWDLHGPGSRLSEGALWGTPAMMRQLAALAVQAAIQAEEEACWQARVTATAPTEEAQVA
Ga0307302_100956704F015886N/ALFYTTPTDDGAIAVTCDLCFASVGCPDPWAAAAAITHHRCDPDPAIAHSDEGVPALDGDQPAALHLLAGLWVASCPTCGFQLANAASQARAERRAARQVCPVCNEVA

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