NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302189_10398253

Scaffold Ga0302189_10398253


Overview

Basic Information
Taxon OID3300028788 Open in IMG/M
Scaffold IDGa0302189_10398253 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)540
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006047Metagenome382Y
F044259Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0302189_103982531F044259GAGGMAEISILRPKRNLISIPVNEAVYCESCACVSNSVGGCCGLCGNISVWPLAEF
Ga0302189_103982532F006047N/AQAVDARGPVDHKLTAEIEGYRNTLGEHIYAEILRRAGHSRDARTIPNAERQKNVVEWMQATTRGFDRLRALAELAGDAQFTAIMRNLNIASARHLPSLSMLKQLVADLEAISDQQVA

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