NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307282_10034206

Scaffold Ga0307282_10034206


Overview

Basic Information
Taxon OID3300028784 Open in IMG/M
Scaffold IDGa0307282_10034206 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2211
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008971Metagenome / Metatranscriptome325Y
F060110Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0307282_100342061F060110GGAVPARDPDRLIKWFIGVVVIAVGVNLFSSFLVAQKWAWLPPAVFVAALLVVLPSTGLLRRERYGTTRARAMALLALTGYLAVTVWGSMTGWPLAVMILSLAYSWEAGVMLMW
Ga0307282_100342064F008971AGGAGMPVNGVLEYLWFRDNDPWWATLLRAVTLIALVVLFAFKGMHKVPSGSKALRTRFNKVVHYRRDVYDRLGYTIHGRGEARVVGPGLVIGIPFVHNVMIESITEQFEPLPPMIRLQPLRELASQINFKVVDLEKALTGVANYRGSLVNSCAAVMRRLVVQANLSDDEISAGLLADESLQQRAHKLGVRLLELNVSASNLTEPAQLAHAFKQEGIVIEGTPAAVLAARTINGAFGPAALTPVEGDAPAA
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