NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307317_10007451

Scaffold Ga0307317_10007451


Overview

Basic Information
Taxon OID3300028720 Open in IMG/M
Scaffold IDGa0307317_10007451 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3249
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029907Metagenome / Metatranscriptome187Y
F097436Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0307317_100074512F029907AGTAGVTIDEELFQTLLEQVRELHRRTDELTRTKSRLHENVRARLNWSPAPSLPDAQRRIADEVVEVLNRPRLSHSQSHELYRAYFGR
Ga0307317_100074515F097436N/AMGPLRGAQMIENLPGNLLLLDENELRTATDDRDVRMSLLFRSWPSLSKVELRELRRLSHERQRLARHHGILRRLHALRGVSADRVPRLGR

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