| Basic Information | |
|---|---|
| Taxon OID | 3300028630 Open in IMG/M |
| Scaffold ID | Ga0302247_1026384 Open in IMG/M |
| Source Dataset Name | Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Ile |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1893 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Odoribacteraceae → Odoribacter → environmental samples → Odoribacter sp. CAG:788 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023862 | Metagenome / Metatranscriptome | 208 | N |
| F036250 | Metagenome / Metatranscriptome | 170 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0302247_10263842 | F023862 | N/A | MRIKIQKKWYNVKSTWAELTIADAQKLAEHEPPAEYLKYLKNEVDGLSPDIEMQVLAWVGEILPFISDMPTEVIESLMPTDRWVILKSLMHIVSGIYLQMPYDVPTDQRPAIVLIEGDLYKVPTVRKVYNRDIYFSTLDFKGFSELLELQQLSDNIVKNAAMLCALVLRKSDDKEQLTEDEKLRRAELFSNISMLDFWRVFFSLMRGLEESVSYTLLCSLRETEKVMRHQLLIQLWKKYYILPVERLGRLIISGFKKVFMRH |
| Ga0302247_10263843 | F036250 | N/A | MSKRISLKDSYSKLYKLLTNYTYQQTVYFREDNPFLTHNRMNPAASKAVFWIKPPAIETLPAEGLHWRVPAIVAAGNLTTVLTIIDDFINNYSQASYWRNIRPLPASEIGIWDGW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |