NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302248_1016592

Scaffold Ga0302248_1016592


Overview

Basic Information
Taxon OID3300028629 Open in IMG/M
Scaffold IDGa0302248_1016592 Open in IMG/M
Source Dataset NameEnriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Leu
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2413
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)44.11Long. (o)-88.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092293Metagenome / Metatranscriptome107N
F092294Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0302248_10165921F092294N/AMSCGEKSNAFANLHDVTLQRLDVYHRNNGGYVFYDSKHFAPTVDHWNTVPVIYVETEPGKPAEHPQFKDVITRTLPAKFRTVGSVSAAHLTETGEKVLKGAIVFSDPAIAAKANAGELSLSTGLASPEAPDPRLPGATRIAGPVTPNHILVFDRGACPNCYPNDSGA
Ga0302248_10165922F092293GGAGGMTRPPALTDRQIQIIRENLDLFPADILKLPEFVDADVTRHTIRNYQRRLKNAAVIDEEEDLLTRLKQYMNRYGLESQFHGPRGVTGFIRHLETKIHLRAIERDNSENTVS
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