NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247822_10916849

Scaffold Ga0247822_10916849


Overview

Basic Information
Taxon OID3300028592 Open in IMG/M
Scaffold IDGa0247822_10916849 Open in IMG/M
Source Dataset NameSoil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)720
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.673Long. (o)-77.032Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020086Metagenome226Y
F026115Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0247822_109168491F026115GGAGGMSDVNTFIDTIGKDVSATVVPRIEGLVQEISTKTFDQYGPRVSTFATQLVKDIIDEQSATVRDFVTGVIQDVFQRYRPELAGELH
Ga0247822_109168492F020086GGAGGMSLVDDLVSNLVERNTIRLNGTFTITLVDGGLSLKGQVFSTVRDQKKNKDLVNIKAPIAADVKVGTIVIPLPQIR

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