NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306867_1006203

Scaffold Ga0306867_1006203


Overview

Basic Information
Taxon OID3300028415 Open in IMG/M
Scaffold IDGa0306867_1006203 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #831 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3457
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027372Metagenome195Y
F038482Metagenome166Y
F065262Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0306867_10062031F065262AGGMSDKDDAPAVNGVKLDSVSGVANAFAYLDKPYNMGDIAVRSSEDLVIIQSRGAHFGHMDALLQAQKQGHISIQQITAGTT
Ga0306867_10062032F027372N/AMDEIVVSSTEALHEDCANLKSQTPLGYVPYGLAGIVINDCDIICGNCATDAELADNDNGAIFGNSEWDYPAPVCEDCQKPLNVTLLVHKTYDPELRFRLRMTEELGGFADTDCLTIEEICEKAAERAAEIGRDYAPTDMFEPDEHFEIPTDSAKYSNIIAPQLRQLAGYEDGAGKGTYNTTTDIGYEIHKEDVLPAFREAYYSEAVNREI
Ga0306867_10062033F038482N/AMSEKLTKADELCDELAETLSLTPDDVEITIEIPHSGDLGGTTTVTDEQIAQMAAGELFRLDGDSQARIEQA
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