NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306864_1007148

Scaffold Ga0306864_1007148


Overview

Basic Information
Taxon OID3300028408 Open in IMG/M
Scaffold IDGa0306864_1007148 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #430 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2768
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → environmental samples → Organic Lake phycodnavirus 2(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077173Metagenome117Y
F102234Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0306864_10071483F077173N/AMYVLLIFNDQECKQFNAMWMYTTIKELIDDTKNVIKYSDVNKKTRIYKTAKSFFRVLKVNSHDTKLYFK
Ga0306864_10071484F102234N/AMPSKYLFLENAQRNLSVWDNLPTLSQSSRECYISATSVKLIFGDIPLFYAVRLKIDLPVMNYASSSNSTPVIAMLSQGTNNITSSGTTENVVFELIHADQI

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