NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306912_1026623

Scaffold Ga0306912_1026623


Overview

Basic Information
Taxon OID3300028376 Open in IMG/M
Scaffold IDGa0306912_1026623 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla E10 #628 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1050
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009587Metagenome315N
F019634Metagenome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0306912_10266232F019634GGAGMNTLTALINTASATNTTRFAAQRGIFFDSISDMIAKLNAEGLATQQNDGERVLVAHKVWMTRYGVATPVNTSNL
Ga0306912_10266233F009587AGGAGMHLYQICYNARRMDRHSEAELWARFKAVRPQDACAVTPARPAPHPMPEQIDAALEWAREYLSTR

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