NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306865_1075347

Scaffold Ga0306865_1075347


Overview

Basic Information
Taxon OID3300028375 Open in IMG/M
Scaffold IDGa0306865_1075347 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #431 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)711
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009455Metagenome317Y
F040417Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0306865_10753471F009455N/AMEQIQIHITPSQLSKIKKGMPIQIKHDSMGSGDMVIAVHPDKAKKMMSAYKRGKGLRIQMDEDEVRASGLLGSLKKLGKRVEKGVVDAGNKIAKPAKKVISKIPKPVRDVLQDEAQSLIDTT
Ga0306865_10753472F040417AGTAGVNAEERFQKEQEYIDALSTLHQHTCYSQFRDNYHRQYFLAHREKSNCNCGGIFTYDHKARHFKSQKHISFLTQ

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