NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306883_113848

Scaffold Ga0306883_113848


Overview

Basic Information
Taxon OID3300028365 Open in IMG/M
Scaffold IDGa0306883_113848 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep lake, Antarctica - Metagenome #83 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)884
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Deep lake
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032101Metagenome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0306883_1138481F032101N/AETALCVSAGIVGDLLTDELDSWHLGICEVKTLDTEDELVILGQNNHVVGRIDTDVWTNSVLFEDTEVKDLAKIADKTNSAIAAEYSEI
Ga0306883_1138482F032101N/AMSNQIEDDEIEQLGNEVAILETALCVSAGIVGDLLTDELDSWHLGICEVKTLDTEDELVILGQNRHVVGRIDTDVWTNSVLFEDTEVKDLAKIADKTN

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