NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306877_1012533

Scaffold Ga0306877_1012533


Overview

Basic Information
Taxon OID3300028363 Open in IMG/M
Scaffold IDGa0306877_1012533 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep lake, Antarctica - Metagenome #2 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1195
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Deep lake
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004364Metagenome441Y
F009587Metagenome315N

Sequences

Protein IDFamilyRBSSequence
Ga0306877_10125331F004364N/AAMNHHTERPCAAVGLTSYRYGHIMIGATSTRDALNEADRSLTQGTATVDRLEIWNALTGLYKKVKV
Ga0306877_10125335F009587GGAGMHLYQICHNARRMDRHSEAELWARFKAVRPQDACAVTPARPAPHPMPEQIDAALSWAREYLLTR

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