NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1011730

Scaffold Ga0247723_1011730


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1011730 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3341
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000852Metagenome / Metatranscriptome860Y
F000868Metagenome / Metatranscriptome853Y
F001781Metagenome / Metatranscriptome635Y
F007468Metagenome / Metatranscriptome350Y
F038241Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_101173010F038241GAGGMLGYTKDDLDQMSNAVHDAKLFYIRNSDVEQVDEDPLVEGLLKANDFLQGLWAEGYFD
Ga0247723_101173011F000868AGGTGGMSFLENENQMVIDAEYSYIGEQLVEDWVNSNLNEGQLYADYCFAEMCESNYLKGRFNQFYDLKPEDQYYIEWDEEA
Ga0247723_10117302F000852AGGAMTTKREYLKSQGITVGARGRFSGAAKVAIDEAVKKGVTFTAEKPAASK
Ga0247723_10117305F001781GGAGMKPDDKDKLNECLKILDTTDLGLSMVWLWTWSTINNIMEDETYKQNVTIDQMWDHLCEAVQAGQGFSLEYGAEQHQDDVLEWMMNRDYIVDTMFEEDEDEDN
Ga0247723_10117309F007468GGAGGLIKSSKFMEYMKLHLISLNQDMDKDLNVESKINIQGQIMATEHLLSVATDIMNASNERVY
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