NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1010969

Scaffold Ga0247723_1010969


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1010969 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3499
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003111Metagenome / Metatranscriptome506Y
F003784Metagenome468Y
F014590Metagenome261Y
F016642Metagenome245N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10109691F003111N/AAKARGIGEVPLHYVVVKRRNAGIDQAWVIQDLAQWIKEKQ
Ga0247723_10109694F016642AGGAMIVRLSKDEVRVCTQLATERWLAKYGSVDKPNYAEGKKHGYLEHELLANVRANVSEWAVASLTDTAWNVPWYPNELHPRRAKLPDVGTNFEVRTVRTRDSIPFWSKDNGKILVGTKILDEDYYSQVEVYGYCNPEEYATSQYRDETISGWRVPVTQLKEFK
Ga0247723_10109696F003784GGAGGMYDNDRERVGHNVTDFAAYGLSHLAAGQNKPTDTHTPTTNPLVDHSAVTSYRGVGVTTEDLTSFIESFASLRAHRVKGVGHDQYSHAKGQKFEAFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDRVLPDCD
Ga0247723_10109699F014590GGAGGVRTRHLQSVTQGHLATTTTRSNALSPYGPVRAGLTTSQITKDQALTELLSCLENIVANLNYKSSTVLDTLDTAIQGVRVALYSTVTEEAGTDTL
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