NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1006019

Scaffold Ga0247723_1006019


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1006019 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5369
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011078Metagenome / Metatranscriptome295N
F037638Metagenome / Metatranscriptome167N
F070031Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10060193F070031AGGMRIIDRRRDEQLGTKAKGLPMYKEFIQLVEKDKRVQSYYNMKDMLLDAFKWDKTPQGHEYWQSVYDSIVIADHPKCPQCNTIGKVKLLKTANKHKCNKCKITF
Ga0247723_10060195F011078N/ALELSKADWLKKATKNIAKNNELARELYQFYFLTILEKPDEQIEKIYRDGYIQFWSIRLLYLCINGNRHPFGESRIYDQHDVYELDFAEEIDLLDEREQAEGIELERINKINQVTESAYFYERELFKLWCSGMSARAIHRKTDISVREVLRVIKLMKERCITK
Ga0247723_10060198F037638N/AMSNIEFILSLQPLYDNWKKTQVFNPTPEQGAILNNVHREIFGRNLPNCSTCITEALHSLLIWANQQQEAITKAQLADDEQKPKRRRKNESNP
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