NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1003662

Scaffold Ga0247723_1003662


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1003662 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7559
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000332Metagenome / Metatranscriptome1283Y
F001538Metagenome / Metatranscriptome674Y
F004432Metagenome / Metatranscriptome438Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10036624F000332GGAMRWLILLSLLGLVGAVAKSGCHVREFYGIGYTVHDPTQRHKEMMAWLDQNAGHCKSTEYMVIWNNLAEWAGTADSTWLRAKIVHGYKDALEREKK
Ga0247723_10036625F001538GGAGMIETIRLFPTVQASGYPNKHDLAQAKLEKQHEVNKTLEVSKQKQTALQDIGFEIYCKKVVQERLRMEIFNNRKLDIYV
Ga0247723_10036626F004432GGAMVTKKPPVKTPAKVAPVKRRTPKPKAEQTINVSVAAPAPVKTEAKKDDSALGKVIGLIEWVDNPFKLFTVILLAFLAFAGYFAWDSRQVILHAITTQDKMPQLAKQENLLAPARSLMKDVEGLVVLVHKANLATNSRTTVLALNSDGAREKAMEGTITSLFNASSDRNSAMVAMLNGEILCEEFKPSSKVGEWGVKQGVNFMCRGSIPPDMGKFAGYIAIGFKDKPEDIAALKTRINLAATDMSEE
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