| Basic Information | |
|---|---|
| Taxon OID | 3300028025 Open in IMG/M |
| Scaffold ID | Ga0247723_1001332 Open in IMG/M |
| Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14655 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (33.33%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: West Virginia | |||||||
| Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000922 | Metagenome | 833 | Y |
| F001964 | Metagenome | 610 | Y |
| F002227 | Metagenome | 580 | Y |
| F003748 | Metagenome / Metatranscriptome | 470 | Y |
| F005388 | Metagenome / Metatranscriptome | 402 | N |
| F012771 | Metagenome / Metatranscriptome | 277 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247723_10013321 | F012771 | GAG | MTPTKPKRPTPKIFVVSDDTHKRLKDYATKKGYKLQFVADEAVSEYLKRKEQQ |
| Ga0247723_100133210 | F001964 | GGAGG | MSRNLFAPPKFKVQISGAIGWSDLKERVVSFKTVEFRTRKEAEAAAKDLNPGEYTQGRLRVVPVEMPEDYDVYPVAERKSI |
| Ga0247723_100133212 | F002227 | N/A | MKLTISSKTNAQTIIDLFNAIITGEVQEHQATPMSIYDDEKHICSIVAANGEQILELIIEREQGDRIVQQGEPETLQ |
| Ga0247723_100133220 | F000922 | AGG | MKAEQWTKAKSLYLAGKTWKAIASDLGLNQSTLLSKASREGLPKVRKEMRNMVSSKETVSLESLSALVRSKLAADAASTLERIETYALEGIKDESTREQILGSVAKRSALVFGWSEQGEQASVSINLLGSMPDRAFEVSVTNESETK |
| Ga0247723_100133222 | F005388 | N/A | MACPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGNPGDNGGACDVTYNNVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNMFAKYAIKAVADSSFTQVETIPSGVNELPWIQTGSAGQALNQATSELTQEMLDVAAATLIRNGATNPDSSGFISFSSDGPVFPLYIGMEASQRIAQNNAALREDLRFADMGSGPGAELLKRIGANRVIKNFRHIPNLFPPRFSYAGGKYTLIQPFTSTSGTKGTVFSVNPSWTTALYEGAFIPTPYVIKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFVHAVEPVFTNQGMTIIFRRCTGALTQIICS |
| Ga0247723_10013323 | F003748 | N/A | MFQVNRKDAGGRYIDAEGEYTVSVTKVEENLDPKGREVCKVTFTTSDGASITDRFLNQENTWFRVNQLVAATNHNVPDGTQVDFLGVKGSYANFLKSMIGLELVITTRFEEYEYNGEKKKTLRLKGMKAVAPVAAETEEKPF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |