NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000828

Scaffold Ga0247723_1000828


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000828 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19665
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017817Metagenome / Metatranscriptome238N
F026251Metagenome / Metatranscriptome198N
F036206Metagenome / Metatranscriptome170Y
F079980Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100082810F079980N/AMTELVYVTNNTNKDLYAEYNFVGYDFPVGNTVEITVPAARHMLGYGDEDKEKYLVQLGMIRLHSELEEAMENLKKVHISSEPPTKNRSLPSAVGVVPLRIEKSVGGKVNQRVA
Ga0247723_100082826F017817N/AMSRKKAEKGINPALEKAINELMATVMLDPTASITDKMKVIDRALKLEALKMKDADEGYGAGLFGDDDEDT
Ga0247723_100082828F036206AGGAGMEMIPKVKTTKVQGQVGTGVTQNKMCVPGDFTPGKLPAGGFQAVWNFKNNVPNDYFTRK
Ga0247723_10008288F026251AGGAGMALAMNKIILANATTNTAGAYFANVSLTAANAGTVIPAGTYMLFPAANVVITANNGSSITTLLANNTGGMILSDGVNVFAQSTIAGAGAVTALTINGGINANSTYTS
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