NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000613

Scaffold Ga0247723_1000613


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000613 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23758
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (82.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002386Metagenome / Metatranscriptome565Y
F040586Metagenome161N
F041187Metagenome160Y
F046915Metagenome / Metatranscriptome150Y
F099169Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10006131F002386AGGAMRFAFIPKAQYTIGQIIQVHGCEMRVESFTHTGRNLIACTLDGAPKFQRVACICTDSPAIQGVTA
Ga0247723_100061310F099169GGAGGMNQTIAEALAPFRPLTYTEHYYVDLGYRYELGKANEHEYKRAQAEGAEARRLLNRGAMEAMMRAY
Ga0247723_100061321F040586N/AMILQELGGAEWLRNILDKKAKMPAKYYRRELDAPSKKEAND
Ga0247723_100061322F041187AGAAGGMTNRPDFPTWSQANLAKFAEEAYAKLCEQDDRIQHLQCDLKTAIEAYRALTKE
Ga0247723_100061337F046915N/AMNITLVHPVHGAKIATMELEAETDEQNGWTRYNPDTPSEPEAAPVNVLEVKRRRKVTTEE
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