| Basic Information | |
|---|---|
| Taxon OID | 3300028025 Open in IMG/M |
| Scaffold ID | Ga0247723_1000107 Open in IMG/M |
| Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 51271 |
| Total Scaffold Genes | 56 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 46 (82.14%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: West Virginia | |||||||
| Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000369 | Metagenome / Metatranscriptome | 1222 | Y |
| F000376 | Metagenome / Metatranscriptome | 1216 | Y |
| F001106 | Metagenome / Metatranscriptome | 776 | Y |
| F008245 | Metagenome / Metatranscriptome | 336 | N |
| F009961 | Metagenome / Metatranscriptome | 310 | Y |
| F012456 | Metagenome / Metatranscriptome | 280 | Y |
| F070122 | Metagenome | 123 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247723_100010716 | F000376 | AGGA | MSEYQDRAKDCKCCSKHVPLPTVLREYNGIVVCPTTFANVLEYKRIWDSYGSRPMGSIRKHFSEYVQELVEGSLKQ |
| Ga0247723_100010719 | F000369 | N/A | MTELEPAVHFDRMNKVVEELLKGNSATQIATLTGFSRKEVLEYVDEWKSVVHNDMNMRDRAREAISGADQHYAMLIKEAWKTVEDADTQGQLNIKAASLKLIADIETKRIAMLQSVGVLENSQIASQIAETERKQELLVGILKEVTAGCPKCKMDVAKRLSQITGVVESINVDEVEVITNVQ |
| Ga0247723_100010724 | F008245 | AGGA | MAEDKNTLQLISDITEFNDLHEYMQDEHLDKALAIVVKLLMTPDVPSSKAPTLIMELQAMSTKFAVMSSVYSTIAKDKAGTVNNNKKNVYYSVKESIDKLVDALKYVVRYNS |
| Ga0247723_100010752 | F009961 | GGAGG | MTVDYKIDAMFELRKFLWKQLKTTGIFDAYDYYSDNLGTEIIPIIPVQQSPEMDQFLNGKKHIIYDKIGMSYEENWLICCEKVLFTIYSTDVTEIYEIRNLMMDLFRRMDESARDANKSKDTNKLIFHSIHVVETSPIEPSAELKGFMSTDVILEVKYSRTTDGTGRFD |
| Ga0247723_100010753 | F012456 | GGAG | LDSSTALIQTASGLERLMAGSAPGVLKDSTVAQISAFLYYESAVLSRLTTNAEFKNLFKTTIFNQIEKDFGEYIDSQARVKPRSLHHVYEWNKAGVPTARLFKLHTIDMGGLSFRINYDFKLSKSSVPSKNKKQKKKYIFANKASVMEAGMPIVIRPRSAERLVFEMDGETVFMPKGTSVTVKKPGGAQASHQFSLSYGRFFGGQLVNSSIKSSGLQRIFNSKMAKALGVPMNIRKVQYSFSPGKIRSQADASLHAAFGGSL |
| Ga0247723_100010754 | F070122 | N/A | MSLATSLMPMKLDIYLQLDTQDENTGAIKKEWIFTRSVPCAAKGIISNSGSGRGGDKQTFNNRYMNEQMLEIRTPDPITYREKITNVRDMNGNVVCKEINYPNNNPTVFEIISSTPITDPFGNVLAYNSVAKRSENQEIGF |
| Ga0247723_100010756 | F001106 | N/A | NMSFDTLKVAELKVIATDFAVDTEGLKNKKDIIAALAEEGVTWSVYQSTVEAIEKDTEEIEILPKFDPKAQPEDTLLVRMTRDNMRYDIHGRTFTKDHPFVAMPEEDAQQIFDTEEGFRLATPKEVQDFYN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |