NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228674_1015008

Scaffold Ga0228674_1015008


Overview

Basic Information
Taxon OID3300028008 Open in IMG/M
Scaffold IDGa0228674_1015008 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 1D_r
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3415
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012872Metagenome / Metatranscriptome276Y
F014505Metagenome / Metatranscriptome262Y
F016957Metagenome / Metatranscriptome243N

Sequences

Protein IDFamilyRBSSequence
Ga0228674_10150081F016957N/AMQLRKYLKEGRKLSDDRTAICVDVGKSGEALFKELTGAHKSSLADDKKHIDFYWGDMKVDVKGLKKMHHSGYILLEFINVWGGHGWCSKKSKAEYIAFQFPDAFYIFRKNHLRRRALDLCEEFDRSKVLRKNWIPYQEAMYKWVGRYSAQDVFTYLKMEDVQDLIFEI
Ga0228674_10150082F014505N/AMGRIETFYRKNFKRLTGFIKEYTDGSYEIASDIVQMVFLRLLELESKGRTNFYEEDSLNFFYVYRSCINTALKYQRAKKKINKVSLEDFDIEDYKPYPEEKAALEKLITYMEDEMKELHWYDEKMIRIHMEGTSMNQIHRDTDIGLTSIKNTIKNGKARIHDRLREDWEDFGNGDYEKI
Ga0228674_10150086F012872AGGMEKESELYQALDYLSKELSDQESMTKEQMWEVFHICADTAAIYRHITDYFTTLDKLILDARIKNGKLKQELYDLKKENHKLNEMLNREMDGF
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