NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228674_1006343

Scaffold Ga0228674_1006343


Overview

Basic Information
Taxon OID3300028008 Open in IMG/M
Scaffold IDGa0228674_1006343 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 1D_r
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5803
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030566Metagenome / Metatranscriptome185N
F081152Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0228674_10063434F030566AGGAMSFNINEFSAQINKHGLAQNNLFLVRIIPPPGFTGIADGAEDNSVSLNLAKELEFFCRTVTLPELDVQTVDIQTQSFGAITRRPQSMAFPVLPTVFMVDSNFAVLKFFHRWMQKIINYDTSAGPISAVDGQLPFEMGYKSDYATTIEVIVYSFQSESITYKYTMSGAYPVQVGNITEAWESSGELITLPVGFTYDELKVSGAKTGSVIEGAGGANGLLSYLSSINTFTQAIRGLKRPRNIQDAINQVSNVSTILKSF
Ga0228674_10063438F081152AGGMANYKSVTPAAAVIDQRKENQNTNAGLYFPSDIGHHAMILNFKEYAYGGSAHVATVGQDSIVLPLPKSLQDNLNVKVGSDELGILGSLTAEASGGALSISNLSDARSKLTNMFGKGVQAEEERLSDVGSIADGLQLAAESSLFLARAGLGSIAPDIAKGISAGAGTAINPYATLVFSGVDLKVHNFEWLLSPDTPAESETLQKIIKTIQRHITPEMQDVAGSGASGTLSRGLMRYPSMVDCFFHGIDHNYFYKLKTSMISQFNVDYAPNGIALNKGGRPSAVRLTMVMTEAAIHTKSDYQIPLSTDNSDETPENTLVDENGNPVARASEGASTEDKGAEGAPITNQPEV
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Institute for Fundamental Biomedical Research
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