NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247834_1090202

Scaffold Ga0247834_1090202


Overview

Basic Information
Taxon OID3300027977 Open in IMG/M
Scaffold IDGa0247834_1090202 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_12m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)1409
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048101Metagenome / Metatranscriptome148N
F062446Metagenome / Metatranscriptome130Y
F082109Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0247834_10902022F048101AGGAGMKKKIKTKKFKNLKEFLETCSEDEQEYIYDLYNNASVADLIDLLFEHLPADDTIKEIEEYREEMEWDDAEAERLNNEKTNSTN
Ga0247834_10902024F062446N/AMTFNIKRIIAFIFVVLAWVLFTFFFIGCASVDKIGQKEGWIPNGMSEDAQDYPTKYNMMDSPDGRRNPNAQVNIFGATY
Ga0247834_10902025F082109N/AMWTPIEIFCLTFLLNHSPMASERLSVKEVIQNREAQLLIESVNLRNDFQY
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