| Basic Information | |
|---|---|
| Taxon OID | 3300027977 Open in IMG/M |
| Scaffold ID | Ga0247834_1006363 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_12m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13294 |
| Total Scaffold Genes | 39 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (66.67%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Spain: Castile-La Mancha | |||||||
| Coordinates | Lat. (o) | 39.9879 | Long. (o) | -1.8737 | Alt. (m) | Depth (m) | 12 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000441 | Metagenome / Metatranscriptome | 1136 | Y |
| F001460 | Metagenome / Metatranscriptome | 690 | Y |
| F001781 | Metagenome / Metatranscriptome | 635 | Y |
| F007468 | Metagenome / Metatranscriptome | 350 | Y |
| F020171 | Metagenome / Metatranscriptome | 225 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247834_100636316 | F000441 | N/A | MKRRMKMKTTDAYVDTVLAEAQRLLWGGSETENIEAHNIIAKLIKDRMEKTEGQNESL |
| Ga0247834_100636317 | F001781 | N/A | LRLEHVMKPQDKDKLNECLKILDSTDLGLSLVWLWTWSTINNIFEDETYKQNCTIDEMWDHLCEAVEAGMGFSLEYGAEQHQDDVLEWMLNRDYIVDSMFEDEEEDEDEDN |
| Ga0247834_100636319 | F007468 | GAG | MKIHLISLNQDLETIEKESLLDDSVDWHFINGQIEATEHLLSVATDIMNDNERYE |
| Ga0247834_100636320 | F001460 | GAG | MLGYTESDLNRMINAVHDSKIFYLRTPSDLMDKTELLADLEMAVSFLQGLWAEGYFDHTN |
| Ga0247834_100636321 | F020171 | AGGCGG | MEQFIDTVAEHITGAMIQEIGEELFDNWSNACLDEGTDYAEYRFMEYASDELKQQYNEYYGYTEKDEYYLC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |