NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247834_1002050

Scaffold Ga0247834_1002050


Overview

Basic Information
Taxon OID3300027977 Open in IMG/M
Scaffold IDGa0247834_1002050 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_12m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)31782
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (85.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002827Metagenome / Metatranscriptome527Y
F006743Metagenome / Metatranscriptome365Y
F037113Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0247834_10020503F037113AGGAGGMNKGWTVWVGGSEINWQHYTHKIDAERIAEFWREVKGYDDVRVEEVA
Ga0247834_10020504F002827AGGAGGMNKEYYQAKADLCRDLFIKQVGEGDSKEAGANLIRMVNALNQINLINYKEEKGNE
Ga0247834_10020508F006743GGAGGVRTNNWRSNTPGLRLVGEGESGSASSPYGPMRAGLTTSQATNKEAQLLELLSSLERKVQILEYRYLEVLNILTDVMARLAELTSSPSKINTTEEKDV
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