NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1009265

Scaffold Ga0209401_1009265


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1009265 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5566
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001981Metagenome / Metatranscriptome608N
F004519Metagenome / Metatranscriptome434Y
F010464Metagenome / Metatranscriptome303N

Sequences

Protein IDFamilyRBSSequence
Ga0209401_100926512F001981N/AMTYPTLITIPKSDICKAEIAQIAQQLTDRINEGEVNPVEAHIKLKAIVKALEATIKATEQAVTAAAYTHGKAFSAFGAEITIKEGSLTPNYDEDPIYADIKAQLKAREELLKIAFRQAGKTAIFDESTGEQVPVCTAKATKASIAVSFK
Ga0209401_10092652F004519N/AMATFRKYAFPKQSDADKVLALCTGTTAAVALGVLDGFICYDILWEGDAPEDATKYETWPEPCGVHSFLGWDEQYTEDYNQHKSL
Ga0209401_10092654F010464AGGVNLIETSLVTTIGAIVGGALAWFTKGRVESDSLQVRQAQAVLAMWQATSESQNKELTQLRNEVVSLRQRLEDMEQLVHELQAENAKLKTLV
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