Scaffold Ga0209401_1006417

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209401_1006417

Scaffold Ga0209401_1006417

Overview

Basic Information
Taxon OID	3300027971 Open in IMG/M
Scaffold ID	Ga0209401_1006417 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6988
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023293	Metagenome	210	Y
F057197	Metagenome / Metatranscriptome	136	Y
F073241	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_100641710	F073241	GAGG	MNLVHVMKDDNGDFEPLDLTPVFYKGNLMCVPHWRIKNTWVFPGGKTYTTAELIGMGAKVSLSLLWPRGWVTKMLGRHNPAMLSQESLTNLIKGKSNAQ
Ga0209401_10064174	F057197	AGG	MTDFAAWRYENLVQFAKESTERMNLLNAEIEALNADLKAAINAYRDLLRRDTSGFLETSHTAETEKTSQ
Ga0209401_10064176	F023293	GGAGG	MRYGILDDEGNVVRWVWHLPPYPHIVQKIKRQRKPKLDLSNVPEALF

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