NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1005159

Scaffold Ga0209401_1005159


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1005159 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7938
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000332Metagenome / Metatranscriptome1283Y
F001538Metagenome / Metatranscriptome674Y
F087179Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209401_10051594F087179N/AMKYLQSKELVAELMNIAILFHGSPTMLRTKIYDVIDKHIPDLDPACMERGCTCIDSFEET
Ga0209401_10051597F001538GAGMIDTIKLFPTVQPSGYPDKHDLAQKKLERQHEVNKANELAKQKQTQLQDIGFEIYCKKTVQDRLRMEIFTNRKLDIYV
Ga0209401_10051598F000332GGAMRWLLLLLLLVLAGAVAKNGCHVREFYGIGYTFHNPTERHQEMVAWLDRNAPYCKSTDFIVIWNNLSEWAGTADSPKIRELVIHGYKDALEREKK
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