NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1002252

Scaffold Ga0209401_1002252


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1002252 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12557
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (68.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006891Metagenome362Y
F007911Metagenome / Metatranscriptome342N
F031026Metagenome183N

Sequences

Protein IDFamilyRBSSequence
Ga0209401_100225210F006891AGGMGADCGWGRKRKTMSTDQINELSERVSLVRESVARIETRQSVILDLLERSQASLGEYHGRLNAMERDAHTIKTKLWLVALVSGAVVSTAWELIKRRFGL
Ga0209401_100225224F007911N/AMPAVTMLDRLIEGAFQELLSATVTGQDYHLSHDLTENKPPSIVIKATMGTEEPVQGSGVFSVPVEIILEQSYDDTTLAAHTQKCSKILQAFYDTSSLTARLNATTAIGAARCYNAKLESSEAEADNEERSMKRNFKLAVIAYPNSTAS
Ga0209401_10022528F031026GAGMRGGRSALLLILSLALASCATVSQTQDGPPPSPDTVSYFIYAWDKAERTNKPCPQAYRDLFAQSLKALSDSLAETERERARK
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