NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1000265

Scaffold Ga0209401_1000265


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1000265 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35814
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (94.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004668Metagenome / Metatranscriptome428Y
F026545Metagenome197N
F038213Metagenome166Y
F061658Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209401_100026526F004668AGGAGGVSAADHIDQIHAQGWTRVDTAPDEWVAVVPNDDNSAFGGTLWKRGSDGADHAEGVTAGHPVSAALDFESAGRALAVLIKSENS
Ga0209401_100026527F061658N/AMAVITEPAYLDEQTGMLTEIVRDAETGEIIGKNERMPEEVPE
Ga0209401_100026532F038213GGAGMTESQARQIISRLDAQSAKIDKLQSQIDEMRGGLAVLKGLGGLLGVGGLGALLAWLQGQG
Ga0209401_10002655F026545GGAMAGVKAKREGAVKPPVWTVTDCSACGKVIDYTDAKRSVFPGVRVLVINFNGAKGGRRYTWKHKACA
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