| Basic Information | |
|---|---|
| Taxon OID | 3300027963 Open in IMG/M |
| Scaffold ID | Ga0209400_1023143 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3596 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (91.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000808 | Metagenome / Metatranscriptome | 882 | Y |
| F006385 | Metagenome / Metatranscriptome | 374 | Y |
| F051126 | Metagenome / Metatranscriptome | 144 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209400_102314312 | F000808 | AGAAGG | MEYTYSLTTSYDGELVNTLRVSDLLEIVNAWNLCVDHGTAKEYATYNLSDPTGKMFTKTFHRNGTVGVK |
| Ga0209400_10231434 | F051126 | AGG | MSAKPYSIEDLLIGKTYRSTNRHDEGVIQYATPRPDVWYGSEFEAYAIEVRSTRGIKNFWATVAVKVGA |
| Ga0209400_10231437 | F006385 | AGG | MILDNGTAAAIIIALTGSLGMMIAFWQRNIQLEKEIRRLQAALRTERLKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |