NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1022952

Scaffold Ga0209400_1022952


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1022952 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3615
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026867Metagenome196Y
F033352Metagenome / Metatranscriptome177N
F042872Metagenome157Y
F048834Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0209400_10229521F033352N/AMTDLTKFRLIENIEVMACRNSAERVVKALNRGEIDQAKQLARKHEIAWHLTDREFQNLNQPHRNNDFCDDE
Ga0209400_102295210F048834GGAGGVYGERAITDRRRVALPTVKDWAAALDAYVAGDREEVVPPGWFTKIEISKQWGKSDVYTNKVLTRMIKAGGAERKVFSIKIKISQRGGKIGYCRRVPHYRLTPVKAGKT
Ga0209400_10229526F042872N/AMSPQSIIDQIESGNCTVGSNPTPSEAYGYNDLRRNGNTAVITQPKKNHYQQHSFLIRGGYPAEPAYHPNPAVARMWSAQR
Ga0209400_10229528F026867GAGMSLGRLNDIAMKLRQQNQALSLRQLGAAYGLGYVRIKQMRELSGFPLIAGKIMPSDFDQWRLMQTGLNSQHRADRLRSAVGKARALKSTSDSRVSWRQIANTLKAEAWLHELREGNESSD
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