NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1002164

Scaffold Ga0209400_1002164


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1002164 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15112
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (84.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000852Metagenome / Metatranscriptome860Y
F009685Metagenome / Metatranscriptome314Y
F033433Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100216410F033433AGGAMYDKPSLEILEVNYSCSPGGVDEFEVYSNSPRDNISNLLFASPKLEEAVKYCYQLGKDFTVRTLAEWEERELAYEASR
Ga0209400_100216411F000263AGGMNAEDIGLPPHLQRLVNYDINGLDIMHGELKNLMLIWEKELENAQAIEDESEEAMDSMERKYCEGFLDALTALYKLTYDLSFAIGIRTENRKDGHI
Ga0209400_10021647F000852AGGAMTTKREYLKQQGITVGVRGRFSGAAKVALQEAVNKGVTFTDEKANKAK
Ga0209400_10021648F009685AGGAGGMKMSDQYVDDVLAEAQRLLWGGSETENIEAHNLISKLIQDRMIKKNLK
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