NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209536_100543075

Scaffold Ga0209536_100543075


Overview

Basic Information
Taxon OID3300027917 Open in IMG/M
Scaffold IDGa0209536_100543075 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1449
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.640199Long. (o)-77.109447Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F015330Metagenome / Metatranscriptome255Y
F040590Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0209536_1005430751F001059AGGMATYDIEALKADLPTAKELAQFVYDKTQISLDLIGKPKEDQYQVAKNALEGKRIPSDYQTDLNPYIDKKELIPMDELKPPPARPDDLPDAGSQVHFFGATNMPHPDDPQSDRKVQINFKKYDNGVVTYQIMGPIEQQAVGERLNKFGQSVPEKYTWLDPRTPETMMRRADGTFTEKGRGLYAYC
Ga0209536_1005430752F040590GAGGMSGYGKIISGGKAMTKGLTKEINDKLSGFSNSHKHSAMISNAVGKVFNQNPLSDPHLNNVNGGKFTTPKLPKNV
Ga0209536_1005430755F015330N/ARGRPKSVVNRATEYGALFNKMNEDRATHGLEPLKTAMEVLIEAMQSKELELKDKSKIALMLAPFESSRAPIISIEHVQNVTKDEEASADDSLDDFLQSIRKI
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