NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209006_10000027

Scaffold Ga0209006_10000027


Overview

Basic Information
Taxon OID3300027908 Open in IMG/M
Scaffold IDGa0209006_10000027 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)145419
Total Scaffold Genes125 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)107 (85.60%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001305Metagenome / Metatranscriptome727Y
F028889Metagenome / Metatranscriptome190Y
F038350Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0209006_1000002737F028889AGGAGGMDPIGFAAVVMALSIPLAAIYAWYRVRKLRTEERLAAIAKGVSVPMADELPPHARSRKAAILLTAGGLGYLITFLLLAHYKADAAQAAVFGVIPICVGIAYFIDAELVRREMHPSA
Ga0209006_1000002756F038350GGAGGMRELRPVLWQEAFIRAVDEPDRETLAQLIREAEFAIFFRRQQLENPANYRDEVRAMNLASLAMDSIKVQKLGGVRNLSLLKDCCSFQKSA
Ga0209006_1000002758F001305GAGGMVADRTTDFSPVYTAWLRKPVVLLVVIRQCHVPIPCSILGESAGAPRVRFKPGWEMDLRKELILAVEEDAAALESCVN
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