Scaffold Ga0209404_10036678

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209404_10036678

Scaffold Ga0209404_10036678

Overview

Basic Information
Taxon OID	3300027906 Open in IMG/M
Scaffold ID	Ga0209404_10036678 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2740
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Tropical Atlantic Ocean
Coordinates	Lat. (^o)	15.249	Long. (^o)	-20.515	Alt. (m)		Depth (m)	55
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020624	Metagenome	223	Y
F081436	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_100366781	F020624	N/A	PGETEGFEAEDRILLDEPYIEDADRYIDEIHFAIPLYRFEKGMFDDKPTRKAGSSIEAYTMKGLRDGVAIAEQRNIPYYIHIDKQTFPFVEVGKKKALTSLEEFLEEVEKSGVTVNEPPEQSDRLKKYKVYGVDDVFLYVQAAKDILAGKEQLETDIPDLDDPYTRPGNRKKIATKIFKALAGSPDMKGRFYRDIDNPLQTIGSKPEGREVLEMLASLMRNTKQKTIKDLENYLNQVYKQNHPDGDPTGYRNT
Ga0209404_100366782	F081436	AGGA	MKITKEDLRKIIKEELTEAFRMEADFAPGTMVNWNVLAKVVKTTSSGRQKVDYERMTMTGAVAELVRSGGAVGGVAIVTDPDGNSHEVEISELSHA

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