NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209404_10006736

Scaffold Ga0209404_10006736


Overview

Basic Information
Taxon OID3300027906 Open in IMG/M
Scaffold IDGa0209404_10006736 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6462
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)15.249Long. (o)-20.515Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003073Metagenome / Metatranscriptome509Y
F007346Metagenome / Metatranscriptome353Y
F066844Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209404_1000673610F066844AGGAGMTEEYVYDRECDDCGSMTCAEVAFFYDDKIFCEWCCPDGYGGEHE
Ga0209404_100067368F003073AGGAGMAKKLENMTQDERIEYWHNVREKERINRRNRIAKLSMEQRAAVISVHNLLDRVLDTALHPDMGGIRAVTAFDLQELSEAMDILQFQFNLRD
Ga0209404_100067369F007346GGAGGMNDNEIRGIRLSQALNWSGQDIFEVAAAAFEDANYHSFNEVFYAAWTEYQKELQDG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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