NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209404_10003431

Scaffold Ga0209404_10003431


Overview

Basic Information
Taxon OID3300027906 Open in IMG/M
Scaffold IDGa0209404_10003431 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9290
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (85.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)15.249Long. (o)-20.515Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003326Metagenome / Metatranscriptome494Y
F004819Metagenome / Metatranscriptome422Y
F005266Metagenome / Metatranscriptome406Y

Sequences

Protein IDFamilyRBSSequence
Ga0209404_1000343120F005266AGGAGMSVHIRYRLYKETGPYLEDEKMTRGYTVVEANTVIPFHEVLKEFYKDLKHRAKVINIWRTPAGEANYRMEEEERLSWSNSGN
Ga0209404_1000343121F004819AGGTGGMQFYPKDQDPRLDERSARFHGRVMKEDLATLSYVPDTTNRDINVARASTYVTWDYDKDMWCEVDHLMMNFYINAKTTDTREYLEDKINRDVVTLIKGPRYYEQAKVYCTIDMEYPEDESIYDIVKVPKKDRKKAGWGISGNEGEITYFVTLHIQECNPMDLIVYDEEGRGDYFDLSGKNLETKEKEMA
Ga0209404_1000343126F003326GGAMATIKEKKKLIKTIKNPIRYFRLSFTRYGGEVAMGSITQDQFDYWEDNDGFEEYMSQVDYDSDEANKDIPKKAQFDQPFYEYGDICHSSGPEWDDSQTLYIEELDKDGKPLENEDGGFVADIQHDLGDLERLGVDVECSATYNQSTIEGPFVFGQYFNKGGWHTPDIIKTGPDGIEFDKMKIRYEDAEGFKVFNEIEYDGEAYYLEEDSTGKSSSFYVGEGLMTKEESK
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